Welcome to the RIA (Regional IBD Analysis) webpage!

Please use the menu to the left to navigate through the documentation.

Citation

Please use the following conference abstract [2] to reference the pipeline before a better reference is available:

@Article{Eu-Ahsunthornwattana:15,
author={Eu-Ahsunthornwattana, J and Howey, R and Cordell, H J},
title={{Regional IBD Analysis}},
journal={TBA},
year=2015
}

Contents

• Introduction
  • Overview
  • Estimation of IBD sharing probabilities
• Installation
• Using RIA
  • Parameter file
  • Temporary Files
  • Using Prior and Posterior Files
• RIA Example
  • Parallel processing
• References

Contact

Please contact Richard Howey with any queries.